This was released a while back and I forgot to post about it. Toad is the best database tool I have found! Not only that, it is free for MySQL.

http://www.quest.com/toad_for_mysql/

Toadâ„¢ for MySQL Freeware - Provides a comprehensive solution for MySQL professionals to create and execute queries, as well as build and manage database objects. You'll benefit from the project manager, the formatting feature, version control integration, the database browser, the security manager and an extensive knowledge base called Knowledge Xpert for MySQL. Download Freeware